F. Moberg and C. Folke, Ecological goods and services of coral reef ecosystems, Ecol Econ, vol.29, issue.2, pp.215-248, 1999.

D. R. Bellwood, T. P. Hughes, C. Folke, and M. Nyström, Confronting the coral reef crisis, Nature, vol.429, p.827, 2004.

G. De'ath, K. E. Fabricius, H. Sweatman, and M. Puotinen, The 27-year decline of coral cover on the great barrier reef and its causes, PNAS, vol.109, issue.44, pp.17995-18004, 2012.

N. E. Cantin, A. L. Cohen, K. B. Karnauskas, A. M. Tarrant, and D. C. Mccorkle, Ocean warming slows coral growth in the central red sea, Science, vol.329, issue.5989, p.322, 2010.

T. P. Hughes, M. L. Barnes, D. R. Bellwood, J. E. Cinner, G. S. Cumming et al., Coral reefs in the Anthropocene, Nature, vol.546, issue.7656, pp.82-90, 2017.

P. J. Durack, S. E. Wijffels, and R. J. Matear, Ocean salinities reveal strong global water cycle intensification during 1950 to, Science, vol.336, pp.455-463, 2000.

A. C. Baker, P. W. Glynn, and B. Riegl, Climate change and coral reef bleaching: an ecological assessment of long-term impacts, recovery trends and future outlook, Estuar Coast Shelf Sci, vol.80, issue.4, pp.435-71, 2008.

S. Xie, C. Deser, G. A. Vecchi, J. Ma, H. Teng et al., Global warming pattern formation: sea surface temperature and rainfall*, J Clim, vol.23, issue.4, pp.966-86, 2010.

R. Van-woesik, D. Vantier, L. M. Glazebrook, and J. S. , Effects of cyclone 'Joy' on nearshore coral communities of the great barrier reef, Mar Ecol Prog Ser, vol.128, pp.261-70, 1995.

M. Devlin, J. Taylor, and J. Brodie, Flood plumes, extent, concentration and composition, GBRMPA Reef Res, vol.8, pp.1-9, 1998.

I. R. Butler, B. Sommer, M. Zann, J. X. Zhao, and J. M. Pandolfi, The cumulative impacts of repeated heavy rainfall, flooding and altered water quality on the highlatitude coral reefs of Hervey Bay, Mar Pollut Bull, vol.96, issue.1-2, pp.356-67, 2015.

R. Berkelmans, A. M. Jones, and B. Schaffelke, Salinity thresholds of Acropora spp. on the great barrier reef, Coral Reefs, vol.31, issue.4, pp.1103-1113, 2012.

A. P. Kerswell and R. J. Jones, Effects of hypo-osmosis on the coral Stylophora pistillata nature and cause of 'low-salinity bleaching, Mar Ecol Prog Ser, vol.253, pp.145-54, 2003.

C. A. Downs, E. Kramarsky-winter, C. M. Woodley, A. Downs, G. Winters et al., Cellular pathology and histopathology of hypo-salinity exposure on the coral Stylophora pistillata, Sci Total Environ, vol.407, issue.17, pp.4838-51, 2009.

S. K. Pierce and J. W. Warren, The taurine efflux portal used to regulate cell volume in response to hypoosmotic stress seems to be similar in many cell types: lessons to be learned from molluscan red blood cells, Amer Zool, vol.41, pp.710-730, 2001.

L. E. Deaton and R. J. Hoffman, Hypoosmotic volume regulation in the sea anemone Metridium senile, Comp Biochem Physiol, vol.91, issue.1, pp.187-91, 1988.

M. A. Ochsenkühn, T. Röthig, D. Angelo, C. Wiedenmann, J. Voolstra et al., The role of floridoside in osmoadaptation of coral-associated algal endosymbionts to high-salinity conditions, Sci Adv, vol.3, p.1602047, 2017.

Y. Paul, H. Heppenstall, M. Ly, S. , A. Raymond et al., Betaines and dimethylsulfoniopropionate as major osmolytes in Cnidaria with endosymbiotic dinoflagellates, Physiol Biochem Zool, vol.83, issue.1, pp.167-73, 2010.

M. Cowlin, Osmoregulation and the anthozoan-dinoflagellate symbiosis: Victoria University of Wellington, 2012.

A. Shinagawa, T. Suzuki, and S. Konosu, The role of free amino acids and betaines in intracellular osmoregulation of marine sponges, NIPPON SUISAN GAKK, vol.58, issue.9, pp.1717-1739, 1992.

B. L. Lockwood and G. N. Somero, Transcriptomic responses to salinity stress in invasive and native blue mussels (genus Mytilus), Mol Ecol, vol.20, issue.3, pp.517-546, 2011.

L. Tomanek and M. J. Zuzow, The proteomic response of the mussel congeners Mytilus galloprovincialis and M. Trossulus to acute heat stress: implications for thermal tolerance limits and metabolic costs of thermal stress, J Exp Biol, vol.213, pp.3559-74, 2010.

B. L. Lockwood, J. G. Sanders, and G. N. Somero, Transcriptomic responses to heat stress in invasive and native blue mussels (genus Mytilus): molecular correlates of invasive success, J Exp Biol, vol.213, pp.3548-58, 2010.

A. Moya, L. Huisman, S. Foret, J. P. Gattuso, D. C. Hayward et al., Rapid acclimation of juvenile corals to CO2 -mediated acidification by upregulation of heat shock protein and Bcl-2 genes, Mol Ecol, vol.24, issue.2, pp.438-52, 2015.

D. J. Barshis, J. T. Ladner, T. A. Oliver, F. O. Seneca, N. Traylor-knowles et al., Genomic basis for coral resilience to climate change, PNAS, vol.110, issue.4, pp.1091-6490, 2013.

T. Röthig, M. A. Ochsenkühn, A. Roik, R. Van-der-merwe, and C. R. Voolstra, Long-term salinity tolerance is accompanied by major restructuring of the coral bacterial microbiome, Mol Ecol, vol.25, issue.6, pp.1308-1331, 2016.

J. Tebben, D. M. Tapiolas, C. A. Motti, D. Abrego, A. P. Negri et al., Induction of larval metamorphosis of the coral Acropora millepora by tetrabromopyrrole isolated from a Pseudoalteromonas bacterium, PLoS One, vol.6, issue.4, p.19082, 2011.

J. B. Raina, D. M. Tapiolas, S. Foret, A. Lutz, D. Abrego et al., DMSP biosynthesis by an animal and its role in coral thermal stress response, Nature, vol.502, issue.7473, pp.677-80, 2013.

N. Siboni, D. Abrego, C. A. Motti, J. Tebben, and T. Harder, Gene expression patterns during the early stages of chemically induced larval metamorphosis and settlement of the coral Acropora millepora, PLoS One, vol.9, issue.3, p.91082, 2014.

C. Aguilar, J. B. Raina, C. A. Motti, S. Foret, D. C. Hayward et al., Transcriptomic analysis of the response of Acropora millepora to hypoosmotic stress provides insights into DMSP biosynthesis by corals, BMC Genomics, vol.18, issue.1, p.612, 2017.

D. Kim, G. Pertea, C. Trapnell, H. Pimentel, R. Kelley et al., TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions, Genome Biol, vol.14, issue.4, p.36, 2013.

S. Anders, P. T. Pyl, and W. Huber, HTSeq--a Python framework to work with highthroughput sequencing data, Bioinformatics, vol.31, issue.2, pp.166-175, 2015.

A. Kauffmann, R. Gentleman, and W. Huber, arrayQualityMetrics--a bioconductor package for quality assessment of microarray data, Bioinformatics, vol.25, issue.3, pp.415-421, 2009.

M. D. Kurman, C. E. Gómez, S. E. Georgian, J. J. Lunden, and E. E. Cordes, Intra-specific variation reveals potential for adaptation to ocean acidification in a coldwater coral from the Gulf of Mexico, Front Mar Sci, vol.4, p.111, 2017.

R. A. González-pech, S. Vargas, W. R. Francis, and G. Wörheide, Transcriptomic resilience of the Montipora digitata Holobiont to low pH, Front Mar Sci, vol.4, p.403, 2017.

M. I. Love, W. Huber, and S. Anders, Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2, Genome Biol, vol.15, issue.12, p.550, 2014.

Y. Benjamini and Y. Hochberg, Controlling the false discovery rate: a practical and powerful approach to multiple testing, J R Stat Soc, B, vol.57, issue.1, pp.289-300, 1995.

S. Maere, K. Heymans, and M. Kuiper, BiNGO: a Cytoscape plugin to assess overrepresentation of gene ontology categories in biological networks, Bioinformatics, vol.21, issue.16, pp.3448-3457, 2005.

M. E. Smoot, K. Ono, J. Ruscheinski, P. L. Wang, and T. Ideker, Cytoscape 2.8: new features for data integration and network visualization, Bioinformatics, vol.27, issue.3, pp.431-433, 2011.

M. P. Lesser, Oxidative stress in marine environments: biochemistry and physiological ecology, Annu Rev Physiol, vol.68, pp.253-78, 2006.

K. Maor-landaw and O. Levy, Gene expression profiles during short-term heat stress; branching vs. massive Scleractinian corals of the Red Sea, PeerJ, vol.4, p.1814, 2016.
DOI : 10.7717/peerj.1814

URL : https://peerj.com/articles/1814.pdf

W. Leggat, F. Seneca, K. Wasmund, L. Ukani, D. Yellowlees et al., Differential responses of the coral host and their algal symbiont to thermal stress, PLoS One, vol.6, issue.10, p.26687, 2011.

. Aguilar, BMC Genomics, vol.20, p.148, 2019.

M. Rodriguez-lanetty, S. Harii, H. Gulberg, and O. , Early molecular responses of coral larvae to hyperthermal stress, Mol Ecol, vol.18, issue.24, pp.5101-5115, 2009.

D. Seveso, S. Montano, G. Strona, I. Orlandi, P. Galli et al., The susceptibility of corals to thermal stress by analyzing Hsp60 expression, Mar Environ Res, vol.99, pp.69-75, 2014.

A. M. Chow, C. Ferrier-pages, S. Khalouei, S. Reynaud, and I. R. Brown, Increased light intensity induces heat shock protein Hsp60 in coral species, Cell Stress Chaperones, vol.14, issue.5, pp.469-76, 2009.

A. Moya, L. Huisman, E. E. Ball, D. C. Hayward, L. C. Grasso et al., Whole transcriptome analysis of the coral Acropora millepora reveals complex responses to CO 2 -driven acidification during the initiation of calcification, Mol Ecol, vol.21, issue.10, pp.2440-54, 2012.

N. Traylor-knowles, N. H. Rose, E. A. Sheets, and S. R. Palumbi, Early transcriptional responses during heat stress in the coral acropora hyacinthus, Biol Bull, vol.232, issue.2, pp.91-100, 2017.

D. Eletto, D. Dersh, and Y. Argon, GRP94 in ER quality control and stress responses, Semin Cell Dev Biol, vol.21, issue.5, pp.479-85, 2010.
DOI : 10.1016/j.semcdb.2010.03.004

URL : http://europepmc.org/articles/pmc3676867?pdf=render

L. Tomanek, M. J. Zuzow, L. Hitt, L. Serafini, and J. J. Valenzuela, Proteomics of hyposaline stress in blue mussel congeners (genus Mytilus): implications for biogeographic range limits in response to climate change, J Exp Biol, vol.215, pp.3905-3921, 2012.

K. Araki and K. Nagata, Protein folding and quality control in the ER, Cold Spring Harb Perspect Biol, vol.3, issue.11, p.7526, 2011.

T. Brown, D. Bourne, and M. Rodriguez-lanetty, Transcriptional activation of c3 and hsp70 as part of the immune response of Acropora millepora to bacterial challenges, PLoS One, vol.8, issue.7, p.67246, 2013.

C. Aguilar, Transcriptomic analyses of the responses of corals to environmental stress, 2016.

N. J. Darling and S. J. Cook, The role of MAPK signalling pathways in the response to endoplasmic reticulum stress, Biochim Biophys Acta, vol.1843, issue.10, pp.2150-63, 2014.

A. Moya, K. Sakamaki, B. M. Mason, L. Huisman, S. Forêt et al., Functional conservation of the apoptotic machinery from coral to man: the diverse and complex Bcl-2 and caspase repertoires of Acropora millepora, BMC Genomics, vol.17, issue.1, p.62, 2016.

K. Maor-landaw, S. Karako-lampert, W. Ben-asher, H. Goffredo, S. Falini et al., Gene expression profiles during short-term heat stress in the red sea coral Stylophora pistillata, Glob Chang Biol, vol.20, issue.10, pp.3026-3061, 2014.

L. J. Ruiz-jones and S. R. Palumbi, Tidal heat pulses on a reef trigger a fine-tuned transcriptional response in corals to maintain homeostasis, Sci Adv, vol.3, p.1601298, 2017.

P. M. Hasegawa, R. A. Bressan, J. Zhu, and H. J. Bohnert, Plant cellular and molecular response to high salinity, Annu Rev Plant Physiol Plant Mol Biol, vol.51, pp.463-99, 2000.

L. Y. Jan and Y. N. Jan, Cloned potassium channels from eukaryotes and prokaryotes, Annu Rev Neurosci, vol.20, pp.91-123, 1997.

Y. Wang and W. H. Wu, Potassium transport and signaling in higher plants, Annu Rev Plant Biol, vol.64, pp.451-76, 2013.

D. Zoccola, P. Ganot, A. Bertucci, N. Caminiti-segonds, N. Techer et al., Bicarbonate transporters in corals point towards a key step in the evolution of cnidarian calcification, Sci Rep, vol.5, p.9983, 2015.

D. Zoccola, E. Tambutté, E. Kulhanek, S. Puverel, J. Scimeca et al., Molecular cloning and localization of a PMCA P-type calcium ATPase from the coral Stylophora pistillata, BBA-Biomembranes, vol.1663, issue.1, pp.117-143, 2004.
URL : https://hal.archives-ouvertes.fr/hal-02109572

S. K. Pierce, Invertebrate cell volume control mechanisms: a coordinated use of intracellular amino acids and inorganic ions as osmotic solute, Biol Bull, vol.163, pp.405-424, 1982.

P. W. Hochachka and G. N. Somero, Biochemical adaptation : mechanism and process in physiological evolution, 2002.

R. W. Hill, E. J. Armstrong, A. M. Florn, C. Li, R. W. Walquist et al., Abundant betaines in giant clams (Tridacnidae) and western Pacific reef corals, including study of coral betaine acclimatization, Mar Ecol Prog Ser, vol.576, pp.27-41, 2017.

Y. Zhang, J. Sun, H. Mu, J. Li, Y. Zhang et al., Proteomic basis of stress responses in the gills of the Pacific oyster Crassostrea gigas, J Proteome Res, vol.14, issue.1, pp.304-321, 2015.

D. Dickson and G. O. Kirst, The role of beta-dimethylsulphoniopropionate, glycine betaine and homarine in the osmoacclimation of Platymonas subcordiformis, Planta, vol.167, pp.536-579, 1986.

S. K. Davy, D. Allemand, and V. M. Weis, Cell biology of cnidarian-dinoflagellate symbiosis, Microbiol Mol Biol Rev, vol.76, issue.2, pp.229-61, 2012.

D. Tchernov, M. Y. Gorbunov, C. De-vargas, N. Yadav, S. Milligan et al., Membrane lipids of symbiotic algae are diagnostic of sensitivity to thermal bleaching in corals, Proc Natl Acad Sci U S A, vol.101, issue.37, pp.13531-13536, 2004.

T. R. Knutson, J. L. Mcbride, J. Chan, K. Emanuel, G. Holland et al., Tropical cyclones and climate change, Nat Geosci, vol.3, issue.3, pp.157-63, 2010.

A. H. Sobel, S. J. Camargo, T. M. Hall, C. Lee, M. K. Tippett et al., Human influence on tropical cyclone intensity, Science, vol.353, issue.6296, p.242, 2016.