The history and biogeography of fishes on coral reefs In Coral Reef Fishes: Dynamics and Diversity in a Complex Ecosystem, pp.5-32, 2002. ,
Rarity in Coral Reef Fish Communities, Coral Reef Fishes: Dynamics and Diversity in a Complex Ecosystem, pp.81-101, 2002. ,
DOI : 10.1016/B978-012615185-5/50006-2
INDO-PACIFIC BIODIVERSITY OF CORAL REEFS: DEVIATIONS FROM A MID-DOMAIN MODEL, Ecology, vol.84, issue.8, pp.2178-2190, 2003. ,
DOI : 10.2307/3546471
Conservation hotspots of biodiversity and endemism for Indo-Pacific coral reef fishes, Aquatic Conservation: Marine and Freshwater Ecosystems, vol.1, issue.3, pp.541-556, 2008. ,
DOI : 10.1002/aqc.880
Diversity, endemism and evolution in the Coral Triangle, Journal of Biogeography, vol.33, issue.10, 2008. ,
DOI : 10.1111/j.1365-2699.2009.02146.x
Reef and Shore Fishes of the South Pacific (University of Hawai'i Press, 2005. ,
Shore fishes of Easter Island (University of Hawai'i Press, 2011. ,
Shore fishes of the Marquesas Islands, an updated checklist with new records and new percentage of endemic species, Check List, vol.11, issue.5, p.1758, 2015. ,
DOI : 10.15560/11.5.1758
URL : https://hal.archives-ouvertes.fr/hal-01223491
Ice ages, pp.339-361, 2003. ,
DOI : 10.1016/B978-012598655-7/50045-8
Sea Level Change Through the Last Glacial Cycle, Science, vol.292, issue.5517, pp.679-86, 2001. ,
DOI : 10.1126/science.1059549
Sea-level fluctuations during the last glacial cycle, Nature, vol.423, issue.6942, pp.853-858, 2003. ,
DOI : 10.1038/nature01690
Early Life Histories, Ocean Currents, and the Population Genetics of Caribbean Reef Fishes, Evolution, vol.49, issue.5, pp.897-910, 1995. ,
DOI : 10.2307/2410412
Phylogeographic structure of false clownfish, Amphiprion ocellaris , explained by sea level changes on the Sunda shelf, Marine Biology, vol.137, issue.4, pp.727-736, 2000. ,
DOI : 10.1007/s002270000379
Post-glacial population history and genetic structure of the northern clingfish ( Gobbiesox maeandricus ), revealed from mtDNA analysis, Marine Biology, vol.138, issue.2, pp.407-419, 2001. ,
DOI : 10.1007/s002270000465
The genetic legacy of the Quaternary ice ages, Nature, vol.405, issue.6789, pp.907-913, 2000. ,
DOI : 10.1038/35016000
Deglacial sea-level record from Tahiti corals and the timing of global meltwater discharge, Nature, vol.382, issue.6588, pp.241-244, 1996. ,
DOI : 10.1038/382241a0
Genetic consequences of climatic oscillations in the Quaternary, Philosophical Transactions of the Royal Society B: Biological Sciences, vol.359, issue.1442, pp.183-195, 2004. ,
DOI : 10.1098/rstb.2003.1388
Response of coral reefs to climate change: Expansion and demise of the southernmost Pacific coral reef, Geophysical Research Letters, vol.184, issue.15, p.15602, 2010. ,
DOI : 10.1029/2010GL044067
40519 | DOI: 10.1038/srep40519 19 Reductions in the mitochondrial DNA diversity of coral reef fish provide evidence of population bottlenecks resulting from Holocene sea-level change, Evolution, vol.7, issue.57, pp.1571-1583, 2003. ,
Did glacial advances during the Pleistocene influence differently the demographic histories of benthic and pelagic Antarctic shelf fishes? ??? Inferences from intraspecific mitochondrial and nuclear DNA sequence diversity, BMC Evolutionary Biology, vol.7, issue.1, p.220, 2007. ,
DOI : 10.1186/1471-2148-7-220
Phylogeography, historical demography, and the role of post-settlement ecology in two Hawaiian damselfish species, Marine Biology, vol.101, issue.6, pp.1207-1217, 2008. ,
DOI : 10.1007/s00227-007-0894-7
Living in the Past: Phylogeography and Population Histories of Indo-Pacific Wrasses (Genus Halichoeres) in Shallow Lagoons versus Outer Reef Slopes, PLoS ONE, vol.460173, issue.6, p.38042, 2012. ,
DOI : 10.1371/journal.pone.0038042.s002
Endemism and dispersal: comparative phylogeography of three surgeonfishes across the Hawaiian Archipelago, Marine Biology, vol.85, issue.4, pp.689-698, 2009. ,
DOI : 10.1007/s00227-008-1119-4
Comparative Phylogeography in Fijian Coral Reef Fishes: A Multi-Taxa Approach towards Marine Reserve Design, PLoS ONE, vol.398, issue.10, p.47710, 2012. ,
DOI : 10.1371/journal.pone.0047710.s001
Area and Endemism, The Quarterly Review of Biology, vol.69, issue.4, pp.451-471, 1994. ,
DOI : 10.1086/418743
The Genetic Consequences of Habitat Fragmentation, Annals of the Missouri Botanical Garden, vol.77, issue.1, pp.13-27, 1990. ,
DOI : 10.2307/2399621
Population Genetic Consequences of Small Population Size: Implications for Plant Conservation, Annual Review of Ecology and Systematics, vol.24, issue.1, pp.217-242, 1993. ,
DOI : 10.1146/annurev.es.24.110193.001245
New paradigms for supporting the resilience of marine ecosystems, Trends in Ecology & Evolution, vol.20, issue.7, pp.380-386, 2005. ,
DOI : 10.1016/j.tree.2005.03.022
Accuracy of Coalescent Likelihood Estimates: Do We Need More Sites, More Sequences, or More Loci?, Molecular Biology and Evolution, vol.23, issue.3, pp.691-700, 2006. ,
DOI : 10.1093/molbev/msj079
Multilocus phylogeography and phylogenetics using sequence-based markers, Genetica, vol.17, issue.3, pp.439-55, 2009. ,
DOI : 10.1007/s10709-008-9293-3
Statistical evaluation of alternative models of human evolution, Proc. Natl Acad. Sci. USA, pp.17614-17619, 2007. ,
DOI : 10.1073/pnas.0708280104
Into and out of the Last Glacial Maximum: sea-level change during Oxygen Isotope Stages 3 and 2, Quaternary Science Reviews, vol.21, issue.1-3, pp.343-360, 2002. ,
DOI : 10.1016/S0277-3791(01)00071-3
Extreme genetic diversity and temporal rather than spatial partitioning in a widely distributed coral reef fish, Marine Biology, vol.292, issue.Suppl., pp.659-670, 2006. ,
DOI : 10.1007/s00227-006-0372-7
High population connectivity across the Indo-Pacific: Congruent lack of phylogeographic structure in three reef fish congeners, Molecular Phylogenetics and Evolution, vol.49, issue.2, pp.629-638, 2008. ,
DOI : 10.1016/j.ympev.2008.08.023
Population structure in two species of the reef goby Gnatholepis (Teleostei: Perciformes) among four South Pacific island groups, Coral Reefs, vol.biogeography, issue.3, pp.357-366, 2004. ,
DOI : 10.1007/s00338-004-0391-0
High genetic connectivity across the Indian and Pacific Oceans in the reef fish Myripristis berndti (Holocentridae), Marine Ecology Progress Series, vol.334, pp.245-254, 2007. ,
DOI : 10.3354/meps334245
Genetic evaluation of marine biogeographical barriers: perspectives from two widespread Indo-Pacific snappers (Lutjanus kasmira and Lutjanus fulvus), Journal of Biogeography, vol.230, issue.1, pp.133-147, 2010. ,
DOI : 10.1111/j.1365-2699.2009.02188.x
URL : https://hal.archives-ouvertes.fr/hal-00609442
High genetic diversities and complex genetic structure in an Indo-Pacific tropical reef fish (Chlorurus sordidus): evidence of an unstable evolutionary past?, Marine Biology, vol.144, issue.4, pp.757-767, 2004. ,
DOI : 10.1007/s00227-003-1224-3
Phylogeography of the Indo-Pacific parrotfish Scarus psittacus: isolation generates distinctive peripheral populations in two oceans, Marine Biology, vol.96, issue.8, pp.1679-1691, 2010. ,
DOI : 10.1007/s00227-010-1442-4
Climate-Driven Range Expansion and Morphological Evolution in a Marine Gastropod, Science, vol.292, issue.5522, pp.1707-1710, 2001. ,
DOI : 10.1126/science.1060102
Contrasting demographic history and phylogeographical patterns in two Indo-Pacific gastropods, Molecular Ecology, vol.42, issue.2, pp.611-626, 2008. ,
DOI : 10.1111/j.1365-294X.2007.03600.x
Palaeoclimate: A great grand-daddy of ice cores, Nature, vol.429, issue.6992, pp.611-612, 2004. ,
DOI : 10.1029/1999PA000430
The number of markers and samples needed for detecting bottlenecks under realistic scenarios, with and without recovery: a simulation-based study, Molecular Ecology, vol.6, issue.13, pp.3444-3450, 2013. ,
DOI : 10.1111/mec.12258
Inferring Population Size History from Large Samples of Genome-Wide Molecular Data - An Approximate Bayesian Computation Approach, PLOS Genetics, vol.45, issue.1, p.1005877, 2016. ,
DOI : 10.1371/journal.pgen.1005877.s031
URL : https://hal.archives-ouvertes.fr/hal-01310742
Bayesian inference of population size history from multiple loci, BMC Evolutionary Biology, vol.8, issue.1, p.289, 2008. ,
DOI : 10.1186/1471-2148-8-289
The Last Glacial Maximum, Science, vol.325, issue.5941, pp.710-714, 2009. ,
DOI : 10.1126/science.1172873
Phylogeography of Two Closely Related Indo-Pacific Butterflyfishes Reveals Divergent Evolutionary Histories and Discordant Results from mtDNA and Microsatellites, Journal of Heredity, vol.103, issue.5, pp.617-629, 2012. ,
DOI : 10.1093/jhered/ess056
Four New Damselfishes (Perciformes: Pomacentridae) from the Marquesas Islands, Copeia, vol.2001, issue.1, pp.92-107, 2001. ,
DOI : 10.1643/0045-8511(2001)001[0092:FNDPPF]2.0.CO;2
A new species of Indo-Pacific fish, Canthigaster criobe, with comments on other Canthigaster (Tetraodontiformes: Tetraodontidae) at the Gambier Archipelago, Zootaxa, vol.3523, pp.80-88, 2012. ,
Species), The American Naturalist, vol.181, issue.1, pp.52-63, 2013. ,
DOI : 10.1086/668593
Genomic signatures of geographic isolation and natural selection in coral reef fishes, Molecular Ecology, vol.96, issue.7, pp.1543-1557, 2015. ,
DOI : 10.1111/mec.13129
Acanthurus reversus, a new species of surgeonfish (Perciformes: Acanthuridae) from the Marquesas Islands, Proceedings of the California Academy of Sciences, pp.473-481, 1999. ,
The Great American Schism: Divergence of Marine Organisms After the Rise of the Central American Isthmus, Annual Review of Ecology, Evolution, and Systematics, vol.39, issue.1, pp.63-91, 2008. ,
DOI : 10.1146/annurev.ecolsys.38.091206.095815
NUCLEAR AND MITOCHONDRIAL SEQUENCE DATA REVEAL AND CONCEAL DIFFERENT DEMOGRAPHIC HISTORIES AND POPULATION GENETIC PROCESSES IN CARIBBEAN REEF FISHES, Evolution, vol.17, issue.12, pp.3380-97, 2010. ,
DOI : 10.1111/j.1558-5646.2010.01071.x
PHYLOGEOGRAPHY OF THE TRUMPETFISHES (AULOSTOMUS): RING SPECIES COMPLEX ON A GLOBAL SCALE, Evolution, vol.278, issue.12, pp.1029-1039, 2001. ,
DOI : 10.1111/j.0014-3820.2001.tb00619.x
Phylogeography of Two Moray Eels Indicates High Dispersal Throughout the Indo-Pacific, Journal of Heredity, vol.101, issue.4, pp.391-402, 2010. ,
DOI : 10.1093/jhered/esq036
Tempo and mode of speciation in the Baja California disjunct fish species Anisotremus davidsonii, Molecular Ecology, vol.163, issue.13, pp.4085-4096, 2005. ,
DOI : 10.1111/j.1365-294X.2005.02729.x
How do insect nuclear and mitochondrial gene substitution patterns differ? Insights from Bayesian analyses of combined datasets, Molecular Phylogenetics and Evolution, vol.30, issue.3, pp.686-702, 2004. ,
DOI : 10.1016/S1055-7903(03)00241-0
Strong Variations of Mitochondrial Mutation Rate across Mammals--the Longevity Hypothesis, Molecular Biology and Evolution, vol.25, issue.1, pp.120-130, 2008. ,
DOI : 10.1093/molbev/msm248
Watching the clock: Studying variation in rates of molecular evolution between species, Trends in Ecology & Evolution, vol.25, issue.9, pp.495-503, 2010. ,
DOI : 10.1016/j.tree.2010.06.007
Endemic and widespread coral reef fishes have similar mitochondrial genetic diversity, Proceedings of the Royal Society B: Biological Sciences, vol.35, issue.5, p.20141068, 2014. ,
DOI : 10.1111/j.1523-1739.2011.01698.x
URL : https://hal.archives-ouvertes.fr/hal-01333327
High Genetic Diversity in Geographically Remote Populations of Endemic and Widespread Coral Reef Angelfishes (genus: Centropyge), Diversity, vol.5, issue.1, pp.39-50, 2013. ,
DOI : 10.3390/d5010039
Ages of seamounts, islands, and plateaus on the Pacific plate, Geol. Soc. Spec. Pap, vol.388, pp.71-90, 2005. ,
DOI : 10.1130/0-8137-2388-4.71
The simple fool's guide to PCR, 1991. ,
DNA barcoding Australia's fish species, Philosophical Transactions of the Royal Society B: Biological Sciences, vol.11, issue.6897, pp.1847-1857, 2005. ,
DOI : 10.1093/molbev/msg133
Seventeen new exon-primed intron-crossing polymerase chain reaction amplifiable introns in fish, Molecular Ecology Notes, vol.11, issue.3, pp.334-340, 2002. ,
DOI : 10.1046/j.1365-294x.1998.00351.x
Universal PCR primers for S7 ribosomal protein gene introns in fish, Mol. Ecol, vol.7, pp.1255-1261, 1998. ,
CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice, Nucleic Acids Research, vol.22, issue.22, pp.4673-4680, 1994. ,
DOI : 10.1093/nar/22.22.4673
A New Statistical Method for Haplotype Reconstruction from Population Data, The American Journal of Human Genetics, vol.68, issue.4, pp.978-989, 2001. ,
DOI : 10.1086/319501
A Comparison of Bayesian Methods for Haplotype Reconstruction from Population Genotype Data, The American Journal of Human Genetics, vol.73, issue.5, pp.1162-1169, 2003. ,
DOI : 10.1086/379378
Accounting for Decay of Linkage Disequilibrium in Haplotype Inference and Missing-Data Imputation, The American Journal of Human Genetics, vol.76, issue.3, pp.449-462, 2005. ,
DOI : 10.1086/428594
DnaSP v5: a software for comprehensive analysis of DNA polymorphism data, Bioinformatics, vol.25, issue.11, pp.1451-1452, 2009. ,
DOI : 10.1093/bioinformatics/btp187
Datamonkey: rapid detection of selective pressure on individual sites of codon alignments, Bioinformatics, vol.21, issue.10, pp.2531-2533, 2005. ,
DOI : 10.1093/bioinformatics/bti320
GARD: a genetic algorithm for recombination detection, Bioinformatics, vol.22, issue.24, pp.3096-3098, 2006. ,
DOI : 10.1093/bioinformatics/btl474
New statistical tests of neutrality for DNA samples from a population, Genetics, vol.143, pp.557-70, 1996. ,
Bayesian Coalescent Inference of Past Population Dynamics from Molecular Sequences, Molecular Biology and Evolution, vol.22, issue.5, pp.1185-92, 2005. ,
DOI : 10.1093/molbev/msi103
BEAST: Bayesian evolutionary analysis by sampling trees, BMC Evolutionary Biology, vol.7, issue.1, p.214, 2007. ,
DOI : 10.1186/1471-2148-7-214
URL : http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2247476
Fish biogeography and molecular clocks: perspectives from the Panamanian isthmus In Molecular systematics of fishes, pp.113-128, 1997. ,
R: A language and environment for statistical computing. Vienna, Austria: R Foundation for Statistical Computing, 2015. ,
Vegan: community ecology package, 2011. ,
ggplot2: elegant graphics for data analysis, 2009. ,
Approximate Bayesian Computation in population genetics, Genetics, vol.162, pp.2025-2035, 2002. ,
ABC as a flexible framework to estimate demography over space and time: some cons, many pros, Molecular Ecology, vol.26, issue.13, pp.2609-2625, 2010. ,
DOI : 10.1111/j.1365-294X.2010.04690.x
Robust Demographic Inference from Genomic and SNP Data, PLoS Genetics, vol.92, issue.10, p.1003905, 2013. ,
DOI : 10.1371/journal.pgen.1003905.s020
URL : http://doi.org/10.1371/journal.pgen.1003905
Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows, Molecular Ecology Resources, vol.127, issue.3, pp.564-567, 2010. ,
DOI : 10.1111/j.1755-0998.2010.02847.x
abc: an R package for approximate Bayesian computation (ABC), Methods in Ecology and Evolution, vol.11, issue.3, pp.475-479, 2012. ,
DOI : 10.1111/j.2041-210X.2011.00179.x
URL : https://hal.archives-ouvertes.fr/hal-00861843
Original S Code et al. maps: Draw Geographical Maps. R package version version 3, 2008. ,